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Early Detection of Branched Broomrape (Phelipanche ramosa) Infestation in Tomato Crops Using Leaf Spectral Analysis and Machine Learning

Narimani, Mohammadreza, Pourreza, Alireza, Moghimi, Ali, Farajpoor, Parastoo, Jafarbiglu, Hamid, Mesgaran, Mohsen B.

arXiv.org Artificial Intelligence

Branched broomrape (Phelipanche ramosa) is a chlorophyll-deficient parasitic weed that threatens tomato production by extracting nutrients from the host. We investigate early detection using leaf-level spectral reflectance (400-2500 nm) and ensemble machine learning. In a field experiment in Woodland, California, we tracked 300 tomato plants across growth stages defined by growing degree days (GDD). Leaf reflectance was acquired with a portable spectrometer and preprocessed (band denoising, 1 nm interpolation, Savitzky-Golay smoothing, correlation-based band reduction). Clear class differences were observed near 1500 nm and 2000 nm water absorption features, consistent with reduced leaf water content in infected plants at early stages. An ensemble combining Random Forest, XGBoost, SVM with RBF kernel, and Naive Bayes achieved 89% accuracy at 585 GDD, with recalls of 0.86 (infected) and 0.93 (noninfected). Accuracy declined at later stages (e.g., 69% at 1568 GDD), likely due to senescence and weed interference. Despite the small number of infected plants and environmental confounders, results show that proximal sensing with ensemble learning enables timely detection of broomrape before canopy symptoms are visible, supporting targeted interventions and reduced yield losses.


AppleGrowthVision: A large-scale stereo dataset for phenological analysis, fruit detection, and 3D reconstruction in apple orchards

von Hirschhausen, Laura-Sophia, Magnusson, Jannes S., Kovalenko, Mykyta, Boye, Fredrik, Rawat, Tanay, Eisert, Peter, Hilsmann, Anna, Pretzsch, Sebastian, Bosse, Sebastian

arXiv.org Artificial Intelligence

Deep learning has transformed computer vision for precision agriculture, yet apple orchard monitoring remains limited by dataset constraints. The lack of diverse, realistic datasets and the difficulty of annotating dense, heterogeneous scenes. Existing datasets overlook different growth stages and stereo imagery, both essential for realistic 3D modeling of orchards and tasks like fruit localization, yield estimation, and structural analysis. To address these gaps, we present AppleGrowthVision, a large-scale dataset comprising two subsets. The first includes 9,317 high resolution stereo images collected from a farm in Brandenburg (Germany), covering six agriculturally validated growth stages over a full growth cycle. The second subset consists of 1,125 densely annotated images from the same farm in Brandenburg and one in Pillnitz (Germany), containing a total of 31,084 apple labels. AppleGrowthVision provides stereo-image data with agriculturally validated growth stages, enabling precise phenological analysis and 3D reconstructions. Extending MinneApple with our data improves YOLOv8 performance by 7.69 % in terms of F1-score, while adding it to MinneApple and MAD boosts Faster R-CNN F1-score by 31.06 %. Additionally, six BBCH stages were predicted with over 95 % accuracy using VGG16, ResNet152, DenseNet201, and MobileNetv2. AppleGrowthVision bridges the gap between agricultural science and computer vision, by enabling the development of robust models for fruit detection, growth modeling, and 3D analysis in precision agriculture. Future work includes improving annotation, enhancing 3D reconstruction, and extending multimodal analysis across all growth stages.


Explainability of Sub-Field Level Crop Yield Prediction using Remote Sensing

Najjar, Hiba, Miranda, Miro, Nuske, Marlon, Roscher, Ribana, Dengel, Andreas

arXiv.org Artificial Intelligence

Crop yield forecasting plays a significant role in addressing growing concerns about food security and guiding decision-making for policymakers and farmers. When deep learning is employed, understanding the learning and decision-making processes of the models, as well as their interaction with the input data, is crucial for establishing trust in the models and gaining insight into their reliability. In this study, we focus on the task of crop yield prediction, specifically for soybean, wheat, and rapeseed crops in Argentina, Uruguay, and Germany. Our goal is to develop and explain predictive models for these crops, using a large dataset of satellite images, additional data modalities, and crop yield maps. We employ a long short-term memory network and investigate the impact of using different temporal samplings of the satellite data and the benefit of adding more relevant modalities. For model explainability, we utilize feature attribution methods to quantify input feature contributions, identify critical growth stages, analyze yield variability at the field level, and explain less accurate predictions. The modeling results show an improvement when adding more modalities or using all available instances of satellite data. The explainability results reveal distinct feature importance patterns for each crop and region. We further found that the most influential growth stages on the prediction are dependent on the temporal sampling of the input data. We demonstrated how these critical growth stages, which hold significant agronomic value, closely align with the existing literature in agronomy and crop development biology.


Semi-Self-Supervised Domain Adaptation: Developing Deep Learning Models with Limited Annotated Data for Wheat Head Segmentation

Ghanbari, Alireza, Shirdel, Gholamhassan, Maleki, Farhad

arXiv.org Artificial Intelligence

Precision agriculture involves the application of advanced technologies to improve agricultural productivity, efficiency, and profitability while minimizing waste and environmental impact. Deep learning approaches enable automated decision-making for many visual tasks. However, in the agricultural domain, variability in growth stages and environmental conditions, such as weather and lighting, presents significant challenges to developing deep learning-based techniques that generalize across different conditions. The resource-intensive nature of creating extensive annotated datasets that capture these variabilities further hinders the widespread adoption of these approaches. To tackle these issues, we introduce a semi-self-supervised domain adaptation technique based on deep convolutional neural networks with a probabilistic diffusion process, requiring minimal manual data annotation. Using only three manually annotated images and a selection of video clips from wheat fields, we generated a large-scale computationally annotated dataset of image-mask pairs and a large dataset of unannotated images extracted from video frames. We developed a two-branch convolutional encoder-decoder model architecture that uses both synthesized image-mask pairs and unannotated images, enabling effective adaptation to real images. The proposed model achieved a Dice score of 80.7\% on an internal test dataset and a Dice score of 64.8\% on an external test set, composed of images from five countries and spanning 18 domains, indicating its potential to develop generalizable solutions that could encourage the wider adoption of advanced technologies in agriculture.


Generating Diverse Agricultural Data for Vision-Based Farming Applications

Cieslak, Mikolaj, Govindarajan, Umabharathi, Garcia, Alejandro, Chandrashekar, Anuradha, Hädrich, Torsten, Mendoza-Drosik, Aleksander, Michels, Dominik L., Pirk, Sören, Fu, Chia-Chun, Pałubicki, Wojciech

arXiv.org Artificial Intelligence

We present a specialized procedural model for generating synthetic agricultural scenes, focusing on soybean crops, along with various weeds. This model is capable of simulating distinct growth stages of these plants, diverse soil conditions, and randomized field arrangements under varying lighting conditions. The integration of real-world textures and environmental factors into the procedural generation process enhances the photorealism and applicability of the synthetic data. Our dataset includes 12,000 images with semantic labels, offering a comprehensive resource for computer vision tasks in precision agriculture, such as semantic segmentation for autonomous weed control. We validate our model's effectiveness by comparing the synthetic data against real agricultural images, demonstrating its potential to significantly augment training data for machine learning models in agriculture. This approach not only provides a cost-effective solution for generating high-quality, diverse data but also addresses specific needs in agricultural vision tasks that are not fully covered by general-purpose models.


Multi-Sensor and Multi-temporal High-Throughput Phenotyping for Monitoring and Early Detection of Water-Limiting Stress in Soybean

Jones, Sarah E., Ayanlade, Timilehin, Fallen, Benjamin, Jubery, Talukder Z., Singh, Arti, Ganapathysubramanian, Baskar, Sarkar, Soumik, Singh, Asheesh K.

arXiv.org Artificial Intelligence

Soybean production is susceptible to biotic and abiotic stresses, exacerbated by extreme weather events. Water limiting stress, i.e. drought, emerges as a significant risk for soybean production, underscoring the need for advancements in stress monitoring for crop breeding and production. This project combines multi-modal information to identify the most effective and efficient automated methods to investigate drought response. We investigated a set of diverse soybean accessions using multiple sensors in a time series high-throughput phenotyping manner to: (1) develop a pipeline for rapid classification of soybean drought stress symptoms, and (2) investigate methods for early detection of drought stress. We utilized high-throughput time-series phenotyping using UAVs and sensors in conjunction with machine learning (ML) analytics, which offered a swift and efficient means of phenotyping. The red-edge and green bands were most effective to classify canopy wilting stress. The Red-Edge Chlorophyll Vegetation Index (RECI) successfully differentiated susceptible and tolerant soybean accessions prior to visual symptom development. We report pre-visual detection of soybean wilting using a combination of different vegetation indices. These results can contribute to early stress detection methodologies and rapid classification of drought responses in screening nurseries for breeding and production applications.


Data-driven Crop Growth Simulation on Time-varying Generated Images using Multi-conditional Generative Adversarial Networks

Drees, Lukas, Demie, Dereje T., Paul, Madhuri R., Leonhardt, Johannes, Seidel, Sabine J., Döring, Thomas F., Roscher, Ribana

arXiv.org Machine Learning

Image-based crop growth modeling can substantially contribute to precision agriculture by revealing spatial crop development over time, which allows an early and location-specific estimation of relevant future plant traits, such as leaf area or biomass. A prerequisite for realistic and sharp crop image generation is the integration of multiple growth-influencing conditions in a model, such as an image of an initial growth stage, the associated growth time, and further information about the field treatment. We present a two-stage framework consisting first of an image prediction model and second of a growth estimation model, which both are independently trained. The image prediction model is a conditional Wasserstein generative adversarial network (CWGAN). In the generator of this model, conditional batch normalization (CBN) is used to integrate different conditions along with the input image. This allows the model to generate time-varying artificial images dependent on multiple influencing factors of different kinds. These images are used by the second part of the framework for plant phenotyping by deriving plant-specific traits and comparing them with those of non-artificial (real) reference images. For various crop datasets, the framework allows realistic, sharp image predictions with a slight loss of quality from short-term to long-term predictions. Simulations of varying growth-influencing conditions performed with the trained framework provide valuable insights into how such factors relate to crop appearances, which is particularly useful in complex, less explored crop mixture systems. Further results show that adding process-based simulated biomass as a condition increases the accuracy of the derived phenotypic traits from the predicted images. This demonstrates the potential of our framework to serve as an interface between an image- and process-based crop growth model.


Multi-growth stage plant recognition: a case study of Palmer amaranth (Amaranthus palmeri) in cotton (Gossypium hirsutum)

Coleman, Guy RY, Kutugata, Matthew, Walsh, Michael J, Bagavathiannan, Muthukumar

arXiv.org Artificial Intelligence

Many advanced, image-based precision agricultural technologies for plant breeding, field crop research, and site-specific crop management hinge on the reliable detection and phenotyping of plants across highly variable morphological growth stages. Convolutional neural networks (CNNs) have shown promise for image-based plant phenotyping and weed recognition, but their ability to recognize growth stages, often with stark differences in appearance, is uncertain. Amaranthus palmeri (Palmer amaranth) is a particularly challenging weed plant in cotton (Gossypium hirsutum) production, exhibiting highly variable plant morphology both across growth stages over a growing season, as well as between plants at a given growth stage due to high genetic diversity. In this paper, we investigate eight-class growth stage recognition of A. palmeri in cotton as a challenging model for You Only Look Once (YOLO) architectures. We compare 26 different architecture variants from YOLO v3, v5, v6, v6 3.0, v7, and v8 on an eight-class growth stage dataset of A. palmeri. The highest mAP@[0.5:0.95] for recognition of all growth stage classes was 47.34% achieved by v8-X, with inter-class confusion across visually similar growth stages. With all growth stages grouped as a single class, performance increased, with a maximum mean average precision (mAP@[0.5:0.95]) of 67.05% achieved by v7-Original. Single class recall of up to 81.42% was achieved by v5-X, and precision of up to 89.72% was achieved by v8-X. Class activation maps (CAM) were used to understand model attention on the complex dataset. Fewer classes, grouped by visual or size features improved performance over the ground-truth eight-class dataset. Successful growth stage detection highlights the substantial opportunity for improving plant phenotyping and weed recognition technologies with open-source object detection architectures.


PhenoBench -- A Large Dataset and Benchmarks for Semantic Image Interpretation in the Agricultural Domain

Weyler, Jan, Magistri, Federico, Marks, Elias, Chong, Yue Linn, Sodano, Matteo, Roggiolani, Gianmarco, Chebrolu, Nived, Stachniss, Cyrill, Behley, Jens

arXiv.org Artificial Intelligence

The production of food, feed, fiber, and fuel is a key task of agriculture. Especially crop production has to cope with a multitude of challenges in the upcoming decades caused by a growing world population, climate change, the need for sustainable production, lack of skilled workers, and generally the limited availability of arable land. Vision systems could help cope with these challenges by offering tools to make better and more sustainable field management decisions and support the breeding of new varieties of crops by allowing temporally dense and reproducible measurements. Recently, tackling perception tasks in the agricultural domain got increasing interest in the computer vision and robotics community since agricultural robotics are one promising solution for coping with the lack of workers and enable a more sustainable agricultural production at the same time. While large datasets and benchmarks in other domains are readily available and have enabled significant progress toward more reliable vision systems, agricultural datasets and benchmarks are comparably rare. In this paper, we present a large dataset and benchmarks for the semantic interpretation of images of real agricultural fields. Our dataset recorded with a UAV provides high-quality, dense annotations of crops and weeds, but also fine-grained labels of crop leaves at the same time, which enable the development of novel algorithms for visual perception in the agricultural domain. Together with the labeled data, we provide novel benchmarks for evaluating different visual perception tasks on a hidden test set comprised of different fields: known fields covered by the training data and a completely unseen field. The tasks cover semantic segmentation, panoptic segmentation of plants, leaf instance segmentation, detection of plants and leaves, and hierarchical panoptic segmentation for jointly identifying plants and leaves.


Projecting Non-Fungible Token (NFT) Collections: A Contextual Generative Approach

Tann, Wesley Joon-Wie, Vuputuri, Akhil, Chang, Ee-Chien

arXiv.org Artificial Intelligence

Non-fungible tokens (NFTs) are digital assets stored on a blockchain representing real-world objects such as art or collectibles. An NFT collection comprises numerous tokens; each token can be transacted multiple times. It is a multibillion-dollar market where the number of collections has more than doubled in 2022. In this paper, we want to obtain a generative model that, given the early transactions history (first quarter Q1) of a newly minted collection, generates subsequent transactions (quarters Q2, Q3, Q4), where the generative model is trained using the transaction history of a few mature collections. The goal is to use the generated transactions to project the potential market value of this newly minted collection over the next few quarters. A technical challenge exists in that different collections have diverse characteristics, and the generative model should generate based on the appropriate "contexts" of the collection. Our method takes a two-step approach. First, it employs unsupervised learning on the early transactions to extract characteristics (which we call contexts) of NFT collections. Next, it generates future transactions of each token based on these contexts and the early transactions, projecting the target collection's potential market value. Comprehensive experiments demonstrate our contextual generative approach's NFT projection capabilities.